Re: high system cpu load during intense disk i/o

From: Dimitrios Apostolou
Date: Mon Aug 06 2007 - 09:30:31 EST


Hello Andrew, thanks for your reply!


Andrew Morton wrote:
On Sun, 5 Aug 2007 19:03:12 +0300 Dimitrios Apostolou <jimis@xxxxxxx> wrote:

was my report so complicated?

We're bad.

Seems that your context switch rate when running two instances of
badblocks against two different disks went batshit insane. It doesn't
happen here.

Please capture the `vmstat 1' output while running the problematic
workload.

The oom-killing could have been unrelated to the CPU load problem. iirc
badblocks uses a lot of memory, so it might have been genuine. Keep an eye
on the /proc/meminfo output and send the kernel dmesg output from the
oom-killing event.

Please see the attached files. Unfortunately I don't see any useful info in them:
*_before: before running any badblocks process
*_while: while running badblocks process, but without any cron job having kicked in
*_bad: 5 minutes later that some cron jobs kicked in

About the OOM killer, indeed I believe that it is unrelated. It started killing after about 2 days, that hundreds of processes were stuck as running and taking up memory, so I suppose the 256 MB RAM were truly filled. I just mentioned it because its behaviour is completely non-helpful. It doesn't touch the badblocks process, it rarely touches the stuck as running cron jobs, but it kills other irrelevant processes. If you still want the killing logs, tell me and I'll search for them.


Thanks,
Dimitris
MemTotal: 255912 kB
MemFree: 22928 kB
Buffers: 123420 kB
Cached: 69168 kB
SwapCached: 0 kB
Active: 118440 kB
Inactive: 86228 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 255912 kB
LowFree: 22928 kB
SwapTotal: 0 kB
SwapFree: 0 kB
Dirty: 76 kB
Writeback: 0 kB
AnonPages: 12088 kB
Mapped: 7608 kB
Slab: 23792 kB
SReclaimable: 18832 kB
SUnreclaim: 4960 kB
PageTables: 508 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 127956 kB
Committed_AS: 24928 kB
VmallocTotal: 770040 kB
VmallocUsed: 2852 kB
VmallocChunk: 766864 kB
MemTotal: 255912 kB
MemFree: 26348 kB
Buffers: 123156 kB
Cached: 68412 kB
SwapCached: 0 kB
Active: 115788 kB
Inactive: 85484 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 255912 kB
LowFree: 26348 kB
SwapTotal: 0 kB
SwapFree: 0 kB
Dirty: 436 kB
Writeback: 0 kB
AnonPages: 9704 kB
Mapped: 5748 kB
Slab: 23680 kB
SReclaimable: 18712 kB
SUnreclaim: 4968 kB
PageTables: 468 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 127956 kB
Committed_AS: 21260 kB
VmallocTotal: 770040 kB
VmallocUsed: 2852 kB
VmallocChunk: 766864 kB
MemTotal: 255912 kB
MemFree: 25428 kB
Buffers: 123280 kB
Cached: 69088 kB
SwapCached: 0 kB
Active: 116216 kB
Inactive: 86068 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 255912 kB
LowFree: 25428 kB
SwapTotal: 0 kB
SwapFree: 0 kB
Dirty: 40 kB
Writeback: 0 kB
AnonPages: 9952 kB
Mapped: 5796 kB
Slab: 23708 kB
SReclaimable: 18764 kB
SUnreclaim: 4944 kB
PageTables: 480 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 127956 kB
Committed_AS: 22060 kB
VmallocTotal: 770040 kB
VmallocUsed: 2852 kB
VmallocChunk: 766864 kB
procs -----------memory---------- ---swap-- -----io---- -system-- ----cpu----
r b swpd free buff cache si so bi bo in cs us sy id wa
4 1 0 22688 123432 69172 0 0 7 78 45 21 3 0 96 1
4 2 0 22680 123432 69180 0 0 0 15872 249 461 34 66 0 0
4 2 0 22680 123432 69180 0 0 0 15872 247 468 37 63 0 0
4 2 0 22680 123432 69180 0 0 0 15872 251 472 38 62 0 0
4 2 0 22680 123432 69180 0 0 0 16000 252 495 43 57 0 0
4 2 0 22680 123432 69180 0 0 0 15872 252 471 32 68 0 0
3 2 0 22680 123440 69180 0 0 0 15984 251 516 73 27 0 0
3 1 0 22680 123440 69180 0 0 0 15872 250 482 33 67 0 0
4 2 0 22620 123440 69180 0 0 0 15872 251 467 30 70 0 0
4 2 0 22620 123440 69180 0 0 0 15872 250 460 45 55 0 0
procs -----------memory---------- ---swap-- -----io---- -system-- ----cpu----
r b swpd free buff cache si so bi bo in cs us sy id wa
0 0 0 26332 123196 68480 0 0 7 17 44 19 3 0 96 0
0 0 0 26324 123196 68484 0 0 0 0 45 16 0 0 100 0
0 0 0 26324 123196 68484 0 0 0 0 32 17 0 0 100 0
0 0 0 26324 123196 68484 0 0 0 0 13 14 0 0 100 0
0 0 0 26324 123196 68484 0 0 0 0 29 13 0 1 99 0
0 0 0 26324 123196 68484 0 0 0 0 25 16 0 0 100 0
0 0 0 26324 123204 68484 0 0 0 56 42 26 0 0 100 0
0 0 0 26324 123204 68484 0 0 0 0 29 16 0 0 100 0
0 0 0 26324 123204 68484 0 0 0 0 27 13 0 0 100 0
0 0 0 26324 123204 68484 0 0 0 0 13 14 0 0 100 0
procs -----------memory---------- ---swap-- -----io---- -system-- ----cpu----
r b swpd free buff cache si so bi bo in cs us sy id wa
2 2 0 25428 123288 69092 0 0 7 27 44 19 3 0 96 0
2 2 0 25420 123288 69096 0 0 0 15744 273 421 0 7 0 93
2 2 0 25420 123288 69096 0 0 0 15872 276 429 0 4 0 96
2 2 0 25420 123288 69096 0 0 0 15872 273 394 0 2 0 98
2 2 0 25420 123288 69096 0 0 0 15872 277 430 0 2 0 98
1 2 0 25420 123288 69096 0 0 0 16000 273 496 2 10 0 88
2 2 0 25360 123292 69096 0 0 0 15996 288 508 0 4 0 96
2 2 0 25360 123292 69096 0 0 0 16000 283 487 0 3 0 97
2 2 0 25360 123292 69096 0 0 0 15872 279 452 0 2 0 98
2 2 0 25360 123292 69096 0 0 0 15872 283 442 0 2 0 98